STRINGSTRING
Bra003555 protein (Brassica rapa) - STRING interaction network
"Bra003555" - AT1G80170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003555AT1G80170 (E=2e-185) | polygalacturonase, putative / pectinase, putative (447 aa)    
Predicted Functional Partners:
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.880
Bra025376
AT3G29090 (E=2e-186) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.880
Bra002257
AT5G19730 (E=2e-204) | pectinesterase family protein (382 aa)
       
  0.880
Bra028699
AT1G69940 (E=6e-183) ATPPME1, PPME1 | PPME1; pectinesterase (363 aa)
       
  0.861
Bra012932
AT5G61680 (E=8e-155) | pectinesterase family protein (296 aa)
       
  0.861
Bra040563
AT1G53830 (E=1e-282) ATPME2 | ATPME2; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (585 aa)
       
  0.776
Bra036280
AT4G02300 (E=2e-193) | pectinesterase family protein (522 aa)
       
  0.776
Bra036279
AT4G02320 (E=2e-214) | pectinesterase family protein (516 aa)
       
  0.776
Bra027350
AT3G14310 (E=5e-294) ATPME3 | ATPME3; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (592 aa)
       
  0.776
Bra022648
AT5G53370 (E=3e-273) ATPMEPCRF, PMEPCRF | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase (586 aa)
       
  0.776
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]