STRINGSTRING
Bra003556 protein (Brassica rapa) - STRING interaction network
"Bra003556" - AT1G80210 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003556AT1G80210 (E=7e-144) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- male gametophyte; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Mov34/MPN/PAD-1 (InterPro-IPR000555); BEST Arabidopsis thaliana protein match is- mov34 family protein (TAIR-AT3G06820.2); Has 785 Blast hits to 706 proteins in 167 species- Archae - 0; Bacteria - 3; Metazoa - 423; Fungi - 147; Plants - 120; Viruses - 0; Other Eukaryotes - 92 (source- NCBI BLink). (377 aa)    
Predicted Functional Partners:
Bra019207
AT4G24820 (E=5e-208) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.993
Bra013838
AT4G24820 (E=8e-209) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.993
Bra024165
AT4G29040 (E=7e-047) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (323 aa)
     
  0.991
Bra011079
AT4G29040 (E=3e-227) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (443 aa)
     
  0.991
Bra010342
AT4G29040 (E=3e-224) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (445 aa)
     
  0.991
Bra025066
AT5G45620 (E=2e-201) | 26S proteasome regulatory subunit, putative (RPN9) (386 aa)
     
  0.984
Bra020980
AT4G19006 (E=4e-201) | 26S proteasome regulatory subunit, putative (RPN9) (386 aa)
     
  0.984
Bra039563
AT4G15160 (E=3e-040) | lipid binding / structural constituent of cell wall (291 aa)
     
  0.984
Bra038089
AT4G15160 (E=2e-043) | lipid binding / structural constituent of cell wall (256 aa)
     
  0.984
Bra037085
AT3G22110 (E=6e-079) PAC1 | PAC1; endopeptidase/ peptidase/ threonine-type endopeptidase (308 aa)
     
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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