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Bra003559 protein (Brassica rapa) - STRING interaction network
"Bra003559" - AT1G80270 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003559AT1G80270 (E=4e-257) | DNA-binding protein, putative (712 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
 
    0.923
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
    0.923
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
     
 
    0.923
Bra000581
AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)
     
 
    0.923
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
        0.502
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
        0.502
Bra022259
AT3G17910 (E=3e-163) SURF1 | SURF1 (SURFEIT 1) (349 aa)
     
   
  0.492
Bra021283
AT3G17910 (E=3e-153) SURF1 | SURF1 (SURFEIT 1) (340 aa)
     
   
  0.492
Bra023533
AT5G15700 (E=0.0) | DNA-directed RNA polymerase (RPOT2) ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (975 aa)
     
 
  0.472
Bra004354
AT1G68990 (E=0.0) | DNA-directed RNA polymerase, mitochondrial (RPOMT) ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (971 aa)
     
 
  0.472
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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