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Bra003560 protein (Brassica rapa) - STRING interaction network
"Bra003560" - AT1G80300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003560AT1G80300 (E=0.0) NTT1, ATNTT1 | NTT1 (NUCLEOTIDE TRANSPORTER 1); ATP-ADP antiporter (616 aa)    
Predicted Functional Partners:
Bra035512
AT1G32200 (E=2e-218) ATS1, ACT1 | ATS1; glycerol-3-phosphate O-acyltransferase (454 aa)
   
          0.515
Bra033846
AT1G32200 (E=3e-205) ATS1, ACT1 | ATS1; glycerol-3-phosphate O-acyltransferase (440 aa)
   
          0.514
Bra011344
AT4G32400 (E=2e-144) SHS1, ATBT1 | SHS1 (SODIUM HYPERSENSITIVE 1); binding / nucleotide transmembrane transporter/ transporter (382 aa)
           
  0.506
Bra007793
AT4G32400 (E=5e-159) SHS1, ATBT1 | SHS1 (SODIUM HYPERSENSITIVE 1); binding / nucleotide transmembrane transporter/ transporter (398 aa)
           
  0.506
Bra009103
AT5G05310 (E=5e-236) | unknown protein (494 aa)
           
  0.478
Bra031177
AT2G21250 (E=7e-165) | mannose 6-phosphate reductase (NADPH-dependent), putative (309 aa)
              0.437
Bra029262
AT5G62420 (E=8e-175) | aldo/keto reductase family protein (316 aa)
              0.437
Bra027828
AT1G59950 (E=3e-155) | aldo/keto reductase, putative (367 aa)
              0.437
Bra010080
AT5G62420 (E=3e-162) | aldo/keto reductase family protein (316 aa)
              0.437
Bra007032
AT3G53880 (E=4e-151) | aldo/keto reductase family protein (311 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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