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Bra003565 protein (Brassica rapa) - STRING interaction network
"Bra003565" - AT1G80410 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003565AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1618 aa)    
Predicted Functional Partners:
Bra023435
AT5G13780 (E=3e-089) | GCN5-related N-acetyltransferase, putative (194 aa)
       
 
  0.955
Bra008803
AT5G13780 (E=1e-082) | GCN5-related N-acetyltransferase, putative (167 aa)
       
 
  0.955
Bra033377
AT1G03150 (E=1e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (283 aa)
       
 
  0.944
Bra030521
AT1G03150 (E=2e-063) | GCN5-related N-acetyltransferase (GNAT) family protein (117 aa)
       
 
  0.944
Bra040280
AT3G06610 (E=1e-038) | DNA-binding enhancer protein-related (115 aa)
       
 
  0.943
Bra029592
AT3G06610 (E=7e-038) | DNA-binding enhancer protein-related (115 aa)
       
 
  0.943
Bra032548
AT1G03650 (E=2e-077) | GCN5-related N-acetyltransferase (GNAT) family protein (158 aa)
       
 
  0.942
Bra005135
AT2G38130 (E=7e-096) ATMAK3 | ATMAK3; N-acetyltransferase (185 aa)
       
 
  0.942
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
 
    0.927
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
    0.927
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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