STRINGSTRING
Bra003566 protein (Brassica rapa) - STRING interaction network
"Bra003566" - AT1G80450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003566AT1G80450 (E=7e-063) | VQ motif-containing protein (173 aa)    
Predicted Functional Partners:
Bra010608
AT4G37710 (E=4e-038) | VQ motif-containing protein (114 aa)
       
 
  0.615
Bra039937
AT2G22880 (E=7e-024) | VQ motif-containing protein (138 aa)
       
 
  0.546
Bra037588
AT3G18360 (E=5e-041) | VQ motif-containing protein (287 aa)
           
  0.505
Bra007373
AT3G58000 (E=4e-057) | VQ motif-containing protein (181 aa)
           
  0.505
Bra033934
AT1G68450 (E=2e-041) | VQ motif-containing protein (137 aa)
           
  0.503
Bra004825
AT2G44340 (E=7e-071) | VQ motif-containing protein (180 aa)
           
  0.481
Bra003642
AT1G78410 (E=9e-036) | VQ motif-containing protein (105 aa)
           
  0.480
Bra035028
AT1G78310 (E=2e-040) | VQ motif-containing protein (294 aa)
           
  0.478
Bra025998
AT1G17147 (E=3e-034) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- VQ (InterPro-IPR008889); BEST Arabidopsis thaliana protein match is- VQ motif-containing protein (TAIR-AT1G78410.1); Has 18 Blast hits to 18 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (98 aa)
           
  0.477
Bra016616
AT1G17147 (E=1e-041) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- VQ (InterPro-IPR008889); BEST Arabidopsis thaliana protein match is- VQ motif-containing protein (TAIR-AT1G78410.1); Has 18 Blast hits to 18 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (97 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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