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Bra003568 protein (Brassica rapa) - STRING interaction network
"Bra003568" - AT5G51280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003568AT5G51280 (E=7e-280) | DEAD-box protein abstrakt, putative (591 aa)    
Predicted Functional Partners:
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
 
  0.760
Bra035318
AT2G43370 (E=1e-011) | U1 small nuclear ribonucleoprotein 70 kDa, putative (127 aa)
     
 
  0.618
Bra012098
AT3G50670 (E=3e-054) U1-70K, U1SNRNP | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding / nucleotide binding (178 aa)
     
 
  0.618
Bra007429
AT2G43370 (E=3e-017) | U1 small nuclear ribonucleoprotein 70 kDa, putative (79 aa)
     
 
  0.618
Bra000304
AT2G43370 (E=2e-118) | U1 small nuclear ribonucleoprotein 70 kDa, putative (321 aa)
     
 
  0.618
Bra037536
AT3G19170 (E=4e-245) ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (1133 aa)
       
      0.615
Bra018811
AT1G49630 (E=0.0) ATPREP2 | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2); catalytic/ metal ion binding / metalloendopeptidase/ metallopeptidase/ zinc ion binding (1064 aa)
       
      0.615
Bra016800
AT3G19170 (E=7e-012) ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (106 aa)
       
      0.615
Bra001738
AT3G19170 (E=0.0) ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (1074 aa)
       
      0.615
Bra028642
AT5G09250 (E=2e-045) KIWI | KIWI; DNA binding / protein binding / transcription coactivator (107 aa)
       
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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