STRINGSTRING
Bra003571 protein (Brassica rapa) - STRING interaction network
"Bra003571" - AT1G80520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003571AT1G80520 (E=4e-077) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 16 plant structures; EXPRESSED DURING- 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s- Sterile alpha motif homology (InterPro-IPR010993); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G15760.1); Has 30 Blast hits to 30 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses [...] (187 aa)    
Predicted Functional Partners:
Bra035175
AT1G80510 (E=1e-198) | amino acid transporter family protein (484 aa)
           
  0.573
Bra026113
AT1G15740 (E=1e-260) | leucine-rich repeat family protein (578 aa)
           
  0.573
Bra003572
AT1G80530 (E=9e-263) | nodulin family protein (557 aa)
           
  0.553
Bra026750
AT1G15757 (E=6e-021) | Encodes a defensin-like (DEFL) family protein. (89 aa)
           
  0.542
Bra008469
AT1G80510 (E=4e-204) | amino acid transporter family protein (482 aa)
           
  0.483
Bra035172
AT1G80530 (E=1e-264) | nodulin family protein (559 aa)
           
  0.468
Bra026749
AT1G15780 (E=3e-184) | unknown protein (1253 aa)
           
  0.449
Bra016651
AT1G15780 (E=3e-223) | unknown protein (1342 aa)
           
  0.449
Bra033783
AT3G47940 (E=4e-152) | DNAJ heat shock protein, putative (325 aa)
           
  0.406
Bra026574
AT2G02880 (E=2e-125) | mucin-related (312 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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