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Bra003573 protein (Brassica rapa) - STRING interaction network
"Bra003573" - AT1G80530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003573AT1G80530 (E=3e-252) | nodulin family protein (560 aa)    
Predicted Functional Partners:
Bra003546
AT1G80040 (E=8e-075) | unknown protein (245 aa)
           
  0.491
Bra026113
AT1G15740 (E=1e-260) | leucine-rich repeat family protein (578 aa)
           
  0.447
Bra026750
AT1G15757 (E=6e-021) | Encodes a defensin-like (DEFL) family protein. (89 aa)
           
  0.428
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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