STRINGSTRING
Bra003577 protein (Brassica rapa) - STRING interaction network
"Bra003577" - AT1G80670 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003577AT1G80670 (E=5e-152) | transducin family protein / WD-40 repeat family protein (276 aa)    
Predicted Functional Partners:
Bra010959
AT1G24310 (E=2e-156) | unknown protein (399 aa)
     
  0.978
Bra016924
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (863 aa)
     
  0.978
Bra007321
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (862 aa)
     
  0.978
Bra004882
AT2G45000 (E=1e-107) EMB2766 | EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore (784 aa)
     
  0.975
Bra034136
AT3G10650 (E=7e-275) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (968 aa)
     
  0.909
Bra027845
AT1G59660 (E=6e-218) | nucleoporin family protein (1047 aa)
     
  0.909
Bra019938
AT1G59660 (E=5e-210) | nucleoporin family protein (1060 aa)
     
  0.909
Bra018441
AT1G10390 (E=4e-233) | nucleoporin family protein (1025 aa)
     
  0.909
Bra001372
AT3G10650 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (1333 aa)
     
  0.909
Bra026798
AT1G14850 (E=0.0) NUP155 | NUP155; nucleocytoplasmic transporter (1450 aa)
     
  0.905
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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