STRINGSTRING
Bra003578 protein (Brassica rapa) - STRING interaction network
"Bra003578" - AT1G80680 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003578AT1G80680 (E=0.0) SAR3, MOS3, PRE, NUP96 | SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3); porin (1194 aa)    
Predicted Functional Partners:
Bra034136
AT3G10650 (E=7e-275) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (968 aa)
     
 
  0.614
Bra001372
AT3G10650 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (1333 aa)
     
 
  0.614
Bra019619
AT5G61850 (E=8e-168) LFY, LFY3 | LFY (LEAFY); chromatin DNA binding / sequence-specific DNA binding / transcription factor (413 aa)
           
  0.540
Bra029305
AT5G61850 (E=3e-171) LFY, LFY3 | LFY (LEAFY); chromatin DNA binding / sequence-specific DNA binding / transcription factor (415 aa)
           
  0.510
Bra019938
AT1G59660 (E=5e-210) | nucleoporin family protein (1060 aa)
     
 
0.505
Bra013364
AT4G18960 (E=1e-118) AG | AG (AGAMOUS); DNA binding / transcription factor (252 aa)
           
  0.505
Bra018441
AT1G10390 (E=4e-233) | nucleoporin family protein (1025 aa)
     
 
0.504
Bra010196
AT1G33410 (E=0.0) SAR1, NUP160, ATNUP160 | SAR1 (suppressor of auxin resistance1) (1927 aa)
     
   
  0.503
Bra009115
AT5G05490 (E=4e-253) SYN1, ATREC8, REC8 | SYN1 (SYNAPTIC 1) (614 aa)
     
   
  0.502
Bra027845
AT1G59660 (E=6e-218) | nucleoporin family protein (1047 aa)
     
 
0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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