STRINGSTRING
Bra003579 protein (Brassica rapa) - STRING interaction network
"Bra003579" - AT1G15860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003579AT1G15860 (E=2e-080) | INVOLVED IN- biological_process unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Defective in cullin neddylation (InterPro-IPR014764), Protein of unknown function DUF298 (InterPro-IPR005176); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G12760.1); Has 576 Blast hits to 576 proteins in 121 species- Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 78; Plants - 51; Viruses - 0; Other Eukaryotes - 44 (source- NCBI BLink). (233 aa)    
Predicted Functional Partners:
Bra038542
AT4G36800 (E=2e-087) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (184 aa)
       
 
  0.899
Bra036361
AT4G36800 (E=5e-098) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (198 aa)
       
 
  0.899
Bra017784
AT4G36800 (E=3e-102) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (187 aa)
       
 
  0.899
Bra014836
AT4G36800 (E=2e-103) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (187 aa)
       
 
  0.899
Bra011708
AT4G36800 (E=9e-104) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (185 aa)
       
 
  0.899
Bra010575
AT4G36800 (E=1e-104) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (185 aa)
       
 
  0.899
Bra024548
AT1G22920 (E=3e-180) CSN5A, JAB1, AJH1 | CSN5A (COP9 SIGNALOSOME 5A) (356 aa)
     
 
  0.836
Bra012351
AT1G22920 (E=1e-170) CSN5A, JAB1, AJH1 | CSN5A (COP9 SIGNALOSOME 5A) (356 aa)
     
 
  0.836
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
       
 
  0.758
Bra034597
AT4G02570 (E=7e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (731 aa)
       
 
  0.758
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]