STRINGSTRING
Bra003584 protein (Brassica rapa) - STRING interaction network
"Bra003584" - AT1G80770 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003584AT1G80770 (E=7e-224) PDE318 | PDE318 (pigment defective 318); GTP binding (482 aa)    
Predicted Functional Partners:
Bra019003
AT1G52980 (E=3e-247) | GTP-binding family protein (582 aa)
     
 
  0.998
Bra028734
AT5G06360 (E=8e-140) | ribosomal protein S8e family protein (260 aa)
     
 
  0.998
Bra009188
AT5G06360 (E=2e-139) | ribosomal protein S8e family protein (260 aa)
     
 
  0.998
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.998
Bra028461
AT2G44860 (E=3e-067) | 60S ribosomal protein L24, putative (164 aa)
     
 
  0.998
Bra025570
AT2G44860 (E=4e-072) | 60S ribosomal protein L24, putative (164 aa)
     
 
  0.998
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.998
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.998
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
     
 
  0.998
Bra000863
AT4G02790 (E=5e-172) | GTP-binding family protein (370 aa)
     
 
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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