STRINGSTRING
Bra003588 protein (Brassica rapa) - STRING interaction network
"Bra003588" - AT1G80840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003588AT1G80840 (E=6e-135) WRKY40, ATWRKY40 | WRKY40; transcription factor (297 aa)    
Predicted Functional Partners:
Bra006208
AT5G13630 (E=0.0) GUN5, CCH, CHLH, CCH1 | GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase (1382 aa)
       
 
  0.558
Bra014692
AT3G56400 (E=1e-093) WRKY70, ATWRKY70 | WRKY70; transcription factor/ transcription repressor (285 aa)
     
   
  0.510
Bra007243
AT3G56400 (E=6e-080) WRKY70, ATWRKY70 | WRKY70; transcription factor/ transcription repressor (276 aa)
     
   
  0.510
Bra003239
AT3G56400 (E=8e-096) WRKY70, ATWRKY70 | WRKY70; transcription factor/ transcription repressor (283 aa)
     
   
  0.510
Bra002421
AT5G22570 (E=2e-098) WRKY38, ATWRKY38 | WRKY38; transcription factor (288 aa)
       
 
  0.493
Bra005104
AT2G38470 (E=3e-093) WRKY33, ATWRKY33 | WRKY33; transcription factor (457 aa)
     
   
0.466
Bra017117
AT2G38470 (E=1e-091) WRKY33, ATWRKY33 | WRKY33; transcription factor (463 aa)
     
   
0.465
Bra000064
AT2G38470 (E=4e-154) WRKY33, ATWRKY33 | WRKY33; transcription factor (473 aa)
     
   
0.465
Bra014426
AT2G46400 (E=7e-058) WRKY46, ATWRKY46 | WRKY46; transcription factor (277 aa)
     
   
  0.426
Bra039970
AT2G44450 (E=4e-269) BGLU15 | BGLU15 (BETA GLUCOSIDASE 15); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (506 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]