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Bra003593 protein (Brassica rapa) - STRING interaction network
"Bra003593" - AT1G80930 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003593AT1G80930 (E=5e-042) | MIF4G domain-containing protein / MA3 domain-containing protein (399 aa)    
Predicted Functional Partners:
Bra037770
AT5G64270 (E=0.0) | splicing factor, putative (1268 aa)
     
    0.985
Bra024281
AT5G64270 (E=0.0) | splicing factor, putative (1245 aa)
     
    0.985
Bra032990
AT5G28740 (E=2e-029) | transcription-coupled DNA repair protein-related (317 aa)
     
  0.977
Bra027126
AT5G28740 (E=2e-028) | transcription-coupled DNA repair protein-related (154 aa)
     
  0.977
Bra020619
AT5G28740 (E=0.0) | transcription-coupled DNA repair protein-related (913 aa)
     
  0.977
Bra010008
AT5G28740 (E=1e-029) | transcription-coupled DNA repair protein-related (259 aa)
     
  0.977
Bra003036
AT5G28740 (E=3e-019) | transcription-coupled DNA repair protein-related (167 aa)
     
  0.977
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
     
  0.972
Bra021844
AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase (442 aa)
     
  0.972
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
     
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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