STRINGSTRING
Bra003594 protein (Brassica rapa) - STRING interaction network
"Bra003594" - AT1G80940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003594AT1G80940 (E=2e-097) | unknown protein (219 aa)    
Predicted Functional Partners:
Bra016305
AT1G27090 (E=3e-107) | glycine-rich protein (407 aa)
           
  0.541
Bra036407
AT2G15240 (E=1e-122) | UNC-50 family protein (254 aa)
           
  0.505
Bra012035
AT2G27090 (E=7e-269) | unknown protein (721 aa)
           
  0.505
Bra013064
AT1G72590 (E=4e-115) | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (312 aa)
           
  0.445
Bra021814
AT2G32810 (E=0.0) BGAL9 | BGAL9 (Beta galactosidase 9); beta-galactosidase/ catalytic/ cation binding / sugar binding (893 aa)
           
  0.426
Bra011946
AT2G28470 (E=0.0) BGAL8 | BGAL8 (beta-galactosidase 8); beta-galactosidase/ catalytic/ cation binding / sugar binding (845 aa)
           
  0.426
Bra000493
AT2G28470 (E=0.0) BGAL8 | BGAL8 (beta-galactosidase 8); beta-galactosidase/ catalytic/ cation binding / sugar binding (844 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]