STRINGSTRING
Bra003600 protein (Brassica rapa) - STRING interaction network
"Bra003600" - AT1G70430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003600AT1G70430 (E=3e-117) | protein kinase family protein (636 aa)    
Predicted Functional Partners:
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
         
  0.952
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
         
  0.952
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
         
  0.952
Bra022139
AT5G47540 (E=9e-185) | binding (343 aa)
     
  0.791
Bra026241
AT4G17270 (E=4e-042) | Mo25 family protein (278 aa)
       
  0.786
Bra024936
AT5G47540 (E=1e-174) | binding (334 aa)
       
  0.786
Bra017480
AT5G47540 (E=5e-161) | binding (386 aa)
       
  0.786
Bra017387
AT2G03410 (E=1e-170) | Mo25 family protein (344 aa)
       
  0.786
Bra014431
AT5G47540 (E=7e-061) | binding (138 aa)
       
  0.786
Bra012670
AT4G17270 (E=2e-173) | Mo25 family protein (339 aa)
       
  0.786
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]