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Bra003601 protein (Brassica rapa) - STRING interaction network
"Bra003601" - AT1G79600 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003601AT1G79600 (E=0.0) | ABC1 family protein (1154 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
   
  0.924
Bra029519
AT4G04850 (E=1e-247) KEA3, ATKEA3 | KEA3; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (819 aa)
   
 
  0.850
Bra020367
AT5G58460 (E=0.0) ATCHX25, CHX25 | ATCHX25; monovalent cation-proton antiporter/ sodium-hydrogen antiporter (921 aa)
   
 
  0.838
Bra032651
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1157 aa)
   
 
  0.834
Bra033232
AT4G00630 (E=0.0) KEA2, ATKEA2 | KEA2; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1118 aa)
     
 
  0.831
Bra033231
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1120 aa)
     
 
  0.831
Bra032572
AT1G01790 (E=2e-179) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (771 aa)
     
 
  0.831
Bra021677
AT2G30920 (E=4e-072) ATCOQ3, EMB3002, COQ3 | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3); hexaprenyldihydroxybenzoate methyltransferase/ polyprenyldihydroxybenzoate methyltransferase (328 aa)
     
  0.813
Bra019192
AT4G25080 (E=8e-069) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (135 aa)
     
  0.813
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
     
  0.813
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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