STRINGSTRING
Bra003607 protein (Brassica rapa) - STRING interaction network
"Bra003607" - AT1G79510 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra003607AT1G79510 (E=4e-111) | unknown protein (273 aa)    
Predicted Functional Partners:
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
          0.451
Bra028811
AT5G03900 (E=1e-239) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 104 Blast hits to 104 proteins in 40 species- Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (509 aa)
   
        0.444
Bra018954
AT1G52220 (E=4e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR-AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species- Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (145 aa)
   
          0.438
Bra015733
AT1G76560 (E=4e-050) CP12-3 | CP12-3 (135 aa)
   
          0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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