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Bra003613 protein (Brassica rapa) - STRING interaction network
"Bra003613" - AT1G79310 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003613AT1G79310 (E=1e-104) AtMC7 | AtMC7 (metacaspase 7); cysteine-type endopeptidase (370 aa)    
Predicted Functional Partners:
Bra031994
AT3G03380 (E=0.0) DegP7 | DegP7 (DegP protease 7); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (1095 aa)
           
  0.487
Bra021361
AT3G03380 (E=4e-304) DegP7 | DegP7 (DegP protease 7); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (1015 aa)
           
  0.487
Bra040445
AT3G63310 (E=8e-115) | glutamate binding (239 aa)
           
  0.483
Bra038082
AT4G15470 (E=5e-123) | EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0005 (InterPro-IPR006214); BEST Arabidopsis thaliana protein match is- glutamate binding (TAIR-AT1G03070.1); Has 4000 Blast hits to 3999 proteins in 955 species- Archae - 0; Bacteria - 1775; Metazoa - 750; Fungi - 92; Plants - 143; Viruses - 77; Other Eukaryotes - 1163 (source- NCBI BLink). (254 aa)
           
  0.483
Bra036891
AT4G14730 (E=1e-075) | transmembrane protein-related (239 aa)
           
  0.483
Bra033373
AT1G03070 (E=1e-123) | glutamate binding (245 aa)
           
  0.483
Bra031411
AT1G03070 (E=4e-014) | glutamate binding (187 aa)
           
  0.483
Bra018534
AT4G02690 (E=7e-099) | glutamate binding (221 aa)
           
  0.483
Bra012786
AT4G15470 (E=3e-130) | EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0005 (InterPro-IPR006214); BEST Arabidopsis thaliana protein match is- glutamate binding (TAIR-AT1G03070.1); Has 4000 Blast hits to 3999 proteins in 955 species- Archae - 0; Bacteria - 1775; Metazoa - 750; Fungi - 92; Plants - 143; Viruses - 77; Other Eukaryotes - 1163 (source- NCBI BLink). (256 aa)
           
  0.483
Bra033028
AT3G27820 (E=1e-223) ATMDAR4, MDAR4 | MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH) (490 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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