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Bra003615 protein (Brassica rapa) - STRING interaction network
"Bra003615" - AT1G79270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003615AT1G79270 (E=2e-210) ECT8 | ECT8 (evolutionarily conserved C-terminal region 8) (509 aa)    
Predicted Functional Partners:
Bra039486
AT5G35910 (E=2e-294) | 3’-5’ exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein (867 aa)
       
 
  0.560
Bra021790
AT2G32415 (E=0.0) | 3’-5’ exonuclease/ nucleic acid binding (863 aa)
       
 
  0.560
Bra021339
AT1G54440 (E=3e-198) | 3’-5’ exonuclease/ nucleic acid binding (590 aa)
       
 
  0.560
Bra005594
AT2G32415 (E=1e-190) | 3’-5’ exonuclease/ nucleic acid binding (892 aa)
       
 
  0.560
Bra005593
AT2G32415 (E=3e-048) | 3’-5’ exonuclease/ nucleic acid binding (115 aa)
       
 
  0.560
Bra002888
AT2G32415 (E=5e-038) | 3’-5’ exonuclease/ nucleic acid binding (454 aa)
       
 
  0.560
Bra034014
AT1G67210 (E=5e-136) | proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (440 aa)
           
  0.499
Bra028416
AT5G38600 (E=2e-131) | proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (429 aa)
           
  0.499
Bra008739
AT5G14760 (E=0.0) AO | AO (L-ASPARTATE OXIDASE); L-aspartate oxidase/ electron carrier/ oxidoreductase ; Catalyzes the oxidation of L-aspartate to iminoaspartate (649 aa)
       
      0.489
Bra000112
AT2G39020 (E=2e-109) | GCN5-related N-acetyltransferase (GNAT) family protein (234 aa)
       
      0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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