STRINGSTRING
Bra003626 protein (Brassica rapa) - STRING interaction network
"Bra003626" - AT1G79020 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003626AT1G79020 (E=1e-087) | transcription factor-related (202 aa)    
Predicted Functional Partners:
Bra021391
AT2G47210 (E=5e-146) | myb family transcription factor (406 aa)
     
  0.962
Bra004471
AT2G47210 (E=5e-099) | myb family transcription factor (432 aa)
     
  0.962
Bra033486
AT4G14385 (E=3e-017) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- vacuole; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro-IPR015418); Has 245 Blast hits to 245 proteins in 100 species- Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 60; Plants - 29; Viruses - 0; Other Eukaryotes - 30 (source- NCBI BLink). (105 aa)
       
  0.954
Bra040776
AT1G54390 (E=3e-133) ING2 | PHD finger protein-related (263 aa)
     
  0.953
Bra015016
AT3G24010 (E=9e-089) ING1, ATING1 | ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (233 aa)
     
  0.953
Bra037784
AT5G64610 (E=3e-237) HAM1 | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (438 aa)
     
  0.950
Bra024313
AT5G64610 (E=4e-027) HAM1 | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (122 aa)
     
  0.950
Bra009399
AT5G09740 (E=3e-249) HAM2 | HAM2 (histone acetyltransferase of the MYST family 2); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (442 aa)
     
  0.950
Bra032588
AT1G02740 (E=1e-060) | chromatin binding (266 aa)
       
  0.944
Bra011751
AT4G37280 (E=6e-149) | MRG family protein (322 aa)
       
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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