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Bra003627 protein (Brassica rapa) - STRING interaction network
"Bra003627" - AT1G79010 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003627AT1G79010 (E=1e-113) | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (222 aa)    
Predicted Functional Partners:
Bra023341
AT5G11770 (E=3e-082) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (217 aa)
 
  0.998
Bra008938
AT5G11770 (E=2e-102) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (216 aa)
 
  0.998
Bra006117
AT5G11770 (E=6e-089) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (217 aa)
 
  0.998
Bra000873
AT4G02580 (E=1e-144) | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (255 aa)
 
  0.997
Bra009347
AT5G08530 (E=5e-233) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
 
  0.996
Bra005998
AT5G08530 (E=1e-232) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
 
  0.996
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
   
  0.996
Bra010822
ATCG01110 (E=5e-030) NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. (71 aa)
 
  0.995
Bra028124
AT5G37510 (E=0.0) EMB1467 | EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH (746 aa)
 
  0.994
Bra037836
AT5G67590 (E=4e-034) FRO1 | FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone) (94 aa)
     
  0.986
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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