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Bra003630 protein (Brassica rapa) - STRING interaction network
"Bra003630" - AT1G78960 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003630AT1G78960 (E=0.0) ATLUP2 | ATLUP2; beta-amyrin synthase/ lupeol synthase (767 aa)    
Predicted Functional Partners:
Bra016822
AT1G11680 (E=2e-126) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (286 aa)
   
  0.935
Bra011548
AT4G34640 (E=4e-159) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (398 aa)
 
 
  0.934
Bra034641
AT4G34640 (E=1e-156) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (441 aa)
 
 
  0.934
Bra017667
AT4G34640 (E=2e-157) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (387 aa)
 
 
  0.933
Bra011549
AT4G34650 (E=9e-194) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase (418 aa)
 
 
  0.933
Bra021490
AT1G11680 (E=4e-255) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (490 aa)
   
  0.932
Bra019839
AT1G11680 (E=5e-271) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (488 aa)
   
  0.932
Bra017668
AT4G34650 (E=8e-107) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase (243 aa)
 
 
  0.930
Bra016820
AT1G11680 (E=8e-128) CYP51G1, EMB1738, CYP51A2, CYP51 | CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase (231 aa)
     
  0.909
Bra023430
AT5G13710 (E=2e-192) SMT1, CPH | SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase (727 aa)
   
 
  0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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