STRINGSTRING
Bra003632 protein (Brassica rapa) - STRING interaction network
"Bra003632" - AT1G78915 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003632AT1G78915 (E=1e-139) | binding (376 aa)    
Predicted Functional Partners:
Bra028811
AT5G03900 (E=1e-239) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 104 Blast hits to 104 proteins in 40 species- Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (509 aa)
   
        0.491
Bra009503
AT5G03900 (E=3e-192) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 98 Blast hits to 98 proteins in 40 species- Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (426 aa)
   
          0.487
Bra013761
AT4G24090 (E=1e-124) | unknown protein (314 aa)
   
        0.453
Bra025180
AT3G26070 (E=6e-119) | plastid-lipid associated protein PAP / fibrillin family protein (243 aa)
   
        0.452
Bra035689
AT2G28605 (E=1e-090) | Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). (235 aa)
   
        0.441
Bra000485
AT2G28605 (E=2e-085) | Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). (240 aa)
   
        0.436
Bra029139
AT5G52110 (E=6e-090) HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) (224 aa)
   
          0.427
Bra014662
AT3G56940 (E=3e-047) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (118 aa)
   
          0.425
Bra037525
AT5G47860 (E=2e-202) | unknown protein (431 aa)
   
          0.421
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
          0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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