STRINGSTRING
Bra003635 protein (Brassica rapa) - STRING interaction network
"Bra003635" - AT1G78850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003635AT1G78850 (E=1e-242) | curculin-like (mannose-binding) lectin family protein (439 aa)    
Predicted Functional Partners:
Bra019013
AT1G53070 (E=4e-116) | legume lectin family protein (276 aa)
           
  0.522
Bra019012
AT1G53070 (E=1e-125) | legume lectin family protein (274 aa)
           
  0.522
Bra009880
AT5G26070 (E=2e-010) | hydroxyproline-rich glycoprotein family protein (125 aa)
           
  0.521
Bra026268
AT4G28300 (E=1e-141) | hydroxyproline-rich glycoprotein family protein (476 aa)
           
  0.497
Bra034618
AT4G33930 (E=1e-048) | glycine-rich protein (298 aa)
           
  0.467
Bra034601
AT4G33930 (E=4e-019) | glycine-rich protein (222 aa)
           
  0.467
Bra034519
AT1G62510 (E=2e-020) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (137 aa)
           
  0.447
Bra027039
AT1G62510 (E=2e-031) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (147 aa)
           
  0.447
Bra010376
AT4G28300 (E=7e-081) | hydroxyproline-rich glycoprotein family protein (491 aa)
           
  0.441
Bra009298
AT5G07030 (E=8e-217) | aspartic-type endopeptidase (439 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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