STRINGSTRING
Bra003641 protein (Brassica rapa) - STRING interaction network
"Bra003641" - AT1G78430 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003641AT1G78430 (E=2e-106) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 16 plant structures; EXPRESSED DURING- 8 growth stages; BEST Arabidopsis thaliana protein match is- tropomyosin-related (TAIR-AT1G17140.2); Has 36552 Blast hits to 19717 proteins in 1278 species- Archae - 377; Bacteria - 3766; Metazoa - 19812; Fungi - 2701; Plants - 1105; Viruses - 197; Other Eukaryotes - 8594 (source- NCBI BLink). (318 aa)    
Predicted Functional Partners:
Bra034840
AT3G11460 (E=4e-310) | pentatricopeptide (PPR) repeat-containing protein (618 aa)
       
      0.612
Bra019205
AT4G24840 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein transport, Golgi organization; LOCATED IN- vacuole; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- COG complex component, COG2 (InterPro-IPR009316); Has 214 Blast hits to 204 proteins in 99 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). (852 aa)
       
      0.612
Bra013840
AT4G24840 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein transport, Golgi organization; LOCATED IN- vacuole; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- COG complex component, COG2 (InterPro-IPR009316); Has 214 Blast hits to 204 proteins in 99 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). (655 aa)
       
      0.612
Bra006992
AT3G53350 (E=1e-123) | myosin heavy chain-related (368 aa)
       
 
  0.595
Bra005357
AT2G35240 (E=1e-106) | plastid developmental protein DAG, putative (234 aa)
           
  0.573
Bra021186
AT3G16630 (E=0.0) ATKINESIN-13A, KINESIN-13A | KINESIN-13A; ATP binding / microtubule motor (788 aa)
       
 
  0.558
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
      0.550
Bra016051
AT1G72530 (E=7e-088) | plastid developmental protein DAG, putative (183 aa)
           
  0.541
Bra003876
AT1G72530 (E=3e-085) | plastid developmental protein DAG, putative (190 aa)
           
  0.541
Bra013439
AT4G20020 (E=3e-081) | unknown protein (385 aa)
     
   
  0.539
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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