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Bra003651 protein (Brassica rapa) - STRING interaction network
"Bra003651" - AT1G78260 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003651AT1G78260 (E=2e-073) | RNA recognition motif (RRM)-containing protein (271 aa)    
Predicted Functional Partners:
Bra024276
AT5G64200 (E=3e-057) ATSC35, SC35 | ATSC35; RNA binding / nucleic acid binding / nucleotide binding (280 aa)
   
     
  0.542
Bra003841
AT1G73530 (E=1e-057) | RNA recognition motif (RRM)-containing protein (257 aa)
   
     
  0.526
Bra013440
AT4G20030 (E=8e-070) | RNA recognition motif (RRM)-containing protein (152 aa)
   
     
  0.524
Bra002976
AT5G54580 (E=9e-038) | RNA recognition motif (RRM)-containing protein (104 aa)
   
     
  0.524
Bra033438
AT3G52380 (E=2e-095) CP33, PDE322 | CP33; RNA binding (309 aa)
   
     
  0.520
Bra033451
AT3G52150 (E=9e-101) | RNA recognition motif (RRM)-containing protein (255 aa)
   
          0.512
Bra039789
AT2G37220 (E=2e-020) | 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative (120 aa)
   
     
  0.511
Bra006904
AT3G52150 (E=3e-104) | RNA recognition motif (RRM)-containing protein (251 aa)
   
          0.509
Bra006904.1-P
AT3G52150 (E=3e-104) | RNA recognition motif (RRM)-containing protein (251 aa)
   
          0.509
Bra017321
AT2G35410 (E=1e-100) | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (304 aa)
   
     
  0.507
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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