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Bra003654 protein (Brassica rapa) - STRING interaction network
"Bra003654" - AT1G22260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003654AT1G22260 (E=1e-270) ZYP1a, ZYP1 | ZYP1a (931 aa)    
Predicted Functional Partners:
Bra004222
AT1G67370 (E=4e-265) ASY1, ATASY1 | ASY1 (ASYNAPTIC 1); DNA binding (599 aa)
           
  0.495
Bra004486
AT2G46980 (E=3e-314) | unknown protein (769 aa)
           
  0.450
Bra040335
AT2G44910 (E=9e-065) ATHB4, ATHB-4 | ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor (321 aa)
           
  0.424
Bra040094
AT4G16780 (E=3e-124) ATHB-2, HAT4, ATHB2 | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (285 aa)
           
  0.424
Bra024948
AT5G47370 (E=1e-106) HAT2 | HAT2; DNA binding / transcription factor/ transcription repressor (276 aa)
           
  0.424
Bra007530
AT3G60390 (E=3e-097) HAT3 | HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor (311 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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