STRINGSTRING
Bra003655 protein (Brassica rapa) - STRING interaction network
"Bra003655" - AT1G78170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003655AT1G78170 (E=1e-092) | unknown protein (225 aa)    
Predicted Functional Partners:
Bra026790
AT1G14970 (E=1e-283) | unknown protein (558 aa)
           
  0.541
Bra039053
AT3G28510 (E=4e-213) | AAA-type ATPase family protein (523 aa)
           
  0.540
Bra033051
AT3G28510 (E=5e-201) | AAA-type ATPase family protein (513 aa)
           
  0.540
Bra025053
AT5G45800 (E=9e-300) MEE62 | MEE62 (maternal effect embryo arrest 62); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (663 aa)
           
  0.502
Bra031751
AT1G10740 (E=9e-251) | unknown protein (463 aa)
           
  0.489
Bra018424
AT1G10740 (E=2e-249) | unknown protein (464 aa)
           
  0.489
Bra024588
AT1G23330 (E=6e-244) | unknown protein (467 aa)
           
  0.479
Bra019212
AT4G24690 (E=3e-273) | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (690 aa)
           
  0.479
Bra013825
AT4G24690 (E=3e-301) | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (702 aa)
           
  0.479
Bra010484
AT4G24690 (E=5e-293) | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (682 aa)
           
  0.479
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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