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Bra003662 protein (Brassica rapa) - STRING interaction network
"Bra003662" - AT1G77940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003662AT1G77940 (E=8e-060) | 60S ribosomal protein L30 (RPL30B) (112 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
   
  0.999
Bra002156
AT5G18400 (E=8e-082) | unknown protein (383 aa)
   
  0.999
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
  0.999
Bra040207
AT5G18380 (E=9e-073) | 40S ribosomal protein S16 (RPS16C) (146 aa)
   
  0.999
Bra040145
AT5G18380 (E=4e-075) | 40S ribosomal protein S16 (RPS16C) (146 aa)
   
  0.999
Bra025108
AT2G09990 (E=8e-038) | 40S ribosomal protein S16 (RPS16A) (125 aa)
   
  0.999
Bra006454
AT5G18380 (E=2e-073) | 40S ribosomal protein S16 (RPS16C) (146 aa)
   
  0.999
Bra001098
AT5G18380 (E=2e-073) | 40S ribosomal protein S16 (RPS16C) (146 aa)
   
  0.999
Bra038852
AT2G20450 (E=2e-059) | 60S ribosomal protein L14 (RPL14A) (156 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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