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Bra003665 protein (Brassica rapa) - STRING interaction network
"Bra003665" - AT1G77850 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003665AT1G77850 (E=5e-120) ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (546 aa)    
Predicted Functional Partners:
Bra024898
AT2G01200 (E=9e-068) IAA32 | IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (167 aa)
       
 
  0.998
Bra023958
AT4G32280 (E=4e-088) IAA29 | IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (243 aa)
       
      0.978
Bra011332
AT4G32280 (E=5e-077) IAA29 | IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (231 aa)
       
      0.978
Bra026166
AT1G15050 (E=5e-045) IAA34 | IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (164 aa)
       
 
  0.923
Bra032254
AT1G48410 (E=0.0) AGO1 | AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (1111 aa)
           
  0.504
Bra014136
AT1G48410 (E=0.0) AGO1 | AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (1079 aa)
           
  0.483
Bra033293
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (1846 aa)
           
  0.477
Bra007720
AT3G62980 (E=0.0) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase (595 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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