STRINGSTRING
Bra003678 protein (Brassica rapa) - STRING interaction network
"Bra003678" - AT1G77590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003678AT1G77590 (E=0.0) LACS9 | LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase (693 aa)    
Predicted Functional Partners:
Bra013735
AT4G23850 (E=0.0) | long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (623 aa)
   
 
0.989
Bra027700
AT1G64400 (E=0.0) | long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative (826 aa)
   
 
0.963
Bra035259
AT4G11030 (E=0.0) | long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative (666 aa)
   
 
0.962
Bra032757
AT4G14070 (E=0.0) AAE15 | AAE15 (acyl-activating enzyme 15); long-chain-fatty-acid-[acyl-carrier-protein] ligase (719 aa)
   
 
0.939
Bra001919
AT3G23790 (E=0.0) | AMP-binding protein, putative (718 aa)
   
 
0.938
Bra031631
AT1G08510 (E=1e-202) FATB | FATB (fatty acyl-ACP thioesterases B); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase (415 aa)
         
  0.933
Bra001177
AT3G05970 (E=0.0) LACS6, ATLACS6 | LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase (696 aa)
   
 
0.932
Bra009951
AT5G27600 (E=0.0) LACS7, ATLACS7 | LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); long-chain-fatty-acid-CoA ligase/ protein binding (698 aa)
   
 
0.932
Bra032284
AT1G49430 (E=0.0) LRD2, LACS2 | LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2); long-chain-fatty-acid-CoA ligase (666 aa)
   
 
0.913
Bra021392
AT2G47240 (E=0.0) CER8, LACS1 | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (660 aa)
   
 
0.903
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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