STRINGSTRING
Bra003688 protein (Brassica rapa) - STRING interaction network
"Bra003688" - AT1G77310 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003688AT1G77310 (E=4e-217) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- response to wounding; LOCATED IN- cellular_component unknown; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 10 growth stages; BEST Arabidopsis thaliana protein match is- wound-responsive family protein (TAIR-AT1G21610.1); Has 304 Blast hits to 291 proteins in 83 species- Archae - 0; Bacteria - 40; Metazoa - 149; Fungi - 37; Plants - 26; Viruses - 7; Other Eukaryotes - 45 (source- NCBI BLink). (658 aa)    
Predicted Functional Partners:
Bra011385
AT4G32820 (E=0.0) | binding (1833 aa)
     
   
  0.617
Bra018532
AT1G56220 (E=6e-049) | dormancy/auxin associated family protein (127 aa)
           
  0.573
Bra000867
AT1G56220 (E=5e-062) | dormancy/auxin associated family protein (131 aa)
           
  0.573
Bra036244
AT1G56220 (E=1e-044) | dormancy/auxin associated family protein (121 aa)
           
  0.483
Bra030065
AT1G27880 (E=0.0) | ATP-dependent DNA helicase, putative (972 aa)
     
   
  0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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