STRINGSTRING
Bra003691 protein (Brassica rapa) - STRING interaction network
"Bra003691" - AT1G77030 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003691AT1G77030 (E=6e-286) | ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (852 aa)    
Predicted Functional Partners:
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
 
  0.998
Bra015344
AT1G04730 (E=0.0) | AAA-type ATPase family protein (1622 aa)
     
 
  0.998
Bra019144
AT4G25730 (E=2e-266) | FtsJ-like methyltransferase family protein ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (818 aa)
     
 
  0.998
Bra010451
AT4G25730 (E=3e-229) | FtsJ-like methyltransferase family protein (765 aa)
     
 
  0.998
Bra008798
AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)
     
 
  0.998
Bra038492
AT4G16630 (E=5e-153) | DEAD/DEAH box helicase, putative (RH28) (908 aa)
   
 
0.997
Bra040743
AT4G16630 (E=2e-266) | DEAD/DEAH box helicase, putative (RH28) (874 aa)
   
 
0.997
Bra035095
AT1G79150 (E=0.0) | binding (835 aa)
     
      0.997
Bra003620
AT1G79150 (E=5e-030) | binding (163 aa)
     
      0.997
Bra011571
AT4G34910 (E=5e-231) | DEAD/DEAH box helicase, putative (RH16) (624 aa)
   
 
0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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