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Bra003692 protein (Brassica rapa) - STRING interaction network
"Bra003692" - AT1G77000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003692AT1G77000 (E=2e-185) ATSKP2;2, SKP2B | SKP2B; ubiquitin-protein ligase (359 aa)    
Predicted Functional Partners:
Bra005763
AT5G03415 (E=2e-129) DPB, ATDPB | DPB; protein binding / protein heterodimerization (365 aa)
       
 
  0.766
Bra014096
AT1G47870 (E=6e-122) E2FC, ATE2F2, ATE2FC | ATE2F2; DNA binding / protein heterodimerization/ transcription factor (367 aa)
       
 
  0.713
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
       
      0.497
Bra000874
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (738 aa)
       
      0.497
Bra009586
AT5G02470 (E=2e-129) DPA | DPA; transcription factor (290 aa)
       
 
  0.475
Bra005726
AT5G02470 (E=4e-127) DPA | DPA; transcription factor (283 aa)
       
 
  0.475
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
           
  0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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