STRINGSTRING
Bra003693 protein (Brassica rapa) - STRING interaction network
"Bra003693" - AT1G76990 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003693AT1G76990 (E=9e-248) ACR3 | ACR3; amino acid binding (450 aa)    
Predicted Functional Partners:
Bra035156
AT1G80760 (E=2e-149) NIP6;1, NIP6, NLM7 | NIP6;1 (NOD26-LIKE INTRINSIC PROTEIN 6;1); boron transporter/ glycerol transmembrane transporter/ urea transmembrane transporter/ water channel/ water transporter (305 aa)
           
  0.552
Bra020777
AT3G06100 (E=2e-119) NLM6, NLM8, NIP7;1 | NIP7;1 (NOD26-LIKE INTRINSIC PROTEIN 7;1); water channel (272 aa)
           
  0.542
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
           
  0.538
Bra033181
AT4G10380 (E=2e-135) NIP5;1, NLM6, NLM8 | NIP5;1; arsenite transmembrane transporter/ boron transporter/ water channel (301 aa)
           
  0.528
Bra000710
AT4G10380 (E=2e-134) NIP5;1, NLM6, NLM8 | NIP5;1; arsenite transmembrane transporter/ boron transporter/ water channel (301 aa)
           
  0.528
Bra008442
AT1G80760 (E=2e-147) NIP6;1, NIP6, NLM7 | NIP6;1 (NOD26-LIKE INTRINSIC PROTEIN 6;1); boron transporter/ glycerol transmembrane transporter/ urea transmembrane transporter/ water channel/ water transporter (305 aa)
           
  0.468
Bra009433
AT5G04740 (E=4e-129) | ACT domain-containing protein (295 aa)
           
  0.448
Bra033493
AT4G15545 (E=8e-139) | unknown protein (335 aa)
           
  0.406
Bra026020
AT1G16870 (E=8e-213) | mitochondrial 28S ribosomal protein S29-related (485 aa)
           
  0.406
Bra017221
AT2G36840 (E=1e-210) | ACT domain-containing protein (406 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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