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Bra003697 protein (Brassica rapa) - STRING interaction network
"Bra003697" - AT1G76952 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003697AT1G76952 (E=4e-030) IDL5 | IDL5 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 5) (102 aa)    
Predicted Functional Partners:
Bra009082
AT5G09805 (E=2e-031) IDL3 | IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3) (103 aa)
           
  0.604
Bra037567
AT3G18715 (E=4e-021) IDL4 | IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4) (95 aa)
           
  0.581
Bra024319
AT5G64667 (E=2e-028) IDL2 | IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) (85 aa)
           
  0.553
Bra022393
AT3G19190 (E=0.0) ATATG2, ATG2 | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- ATG2, C-terminal (InterPro-IPR015412); Has 603 Blast hits to 514 proteins in 156 species- Archae - 0; Bacteria - 19; Metazoa - 326; Fungi - 168; Plants - 38; Viruses - 0; Other Eukaryotes - 52 (source- NCBI BLink). (1878 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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