STRINGSTRING
Bra003698 protein (Brassica rapa) - STRING interaction network
"Bra003698" - AT1G76950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003698AT1G76950 (E=0.0) PRAF1 | PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding (1077 aa)    
Predicted Functional Partners:
Bra021721
AT2G31650 (E=0.0) ATX1, SDG27 | ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (962 aa)
     
 
    0.866
Bra040838
AT4G27910 (E=2e-220) ATX4, SDG16 | SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding (932 aa)
     
 
    0.865
Bra040432
AT3G63130 (E=2e-222) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (536 aa)
     
  0.702
Bra026911
AT5G19320 (E=8e-039) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (132 aa)
     
  0.702
Bra020788
AT3G06000 (E=3e-064) | leucine-rich repeat family protein (236 aa)
     
  0.702
Bra020034
AT5G19320 (E=1e-042) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (246 aa)
     
  0.702
Bra013834
AT3G63130 (E=1e-031) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (132 aa)
     
  0.702
Bra007730
AT3G63130 (E=1e-219) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (535 aa)
     
  0.702
Bra002227
AT5G19320 (E=5e-211) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (539 aa)
     
  0.702
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.692
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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