STRINGSTRING
Bra003703 protein (Brassica rapa) - STRING interaction network
"Bra003703" - AT1G76880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003703AT1G76880 (E=5e-173) | trihelix DNA-binding protein, putative (613 aa)    
Predicted Functional Partners:
Bra001333
AT3G09010 (E=2e-162) | protein kinase family protein (390 aa)
       
 
  0.559
Bra022762
AT5G50780 (E=1e-275) | ATP binding (759 aa)
           
  0.468
Bra019199
AT4G24970 (E=1e-302) | ATP-binding region, ATPase-like domain-containing protein (696 aa)
           
  0.468
Bra013851
AT4G24970 (E=4e-284) | ATP-binding region, ATPase-like domain-containing protein (695 aa)
           
  0.468
Bra005127
AT2G38250 (E=3e-075) | DNA-binding protein-related (292 aa)
           
  0.439
Bra000046
AT2G38250 (E=3e-073) | DNA-binding protein-related (294 aa)
           
  0.439
Bra005661
AT5G01950 (E=8e-266) | ATP binding / kinase/ protein serine/threonine kinase (796 aa)
       
 
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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