STRINGSTRING
Bra003714 protein (Brassica rapa) - STRING interaction network
"Bra003714" - AT1G76600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003714AT1G76600 (E=3e-072) | unknown protein (210 aa)    
Predicted Functional Partners:
Bra012479
AT1G25400 (E=8e-086) | unknown protein (288 aa)
     
   
  0.618
Bra004841
AT2G44500 (E=6e-155) | unknown protein (529 aa)
     
   
  0.564
Bra029686
AT3G07900 (E=3e-208) | unknown protein (452 aa)
     
   
  0.524
Bra000158
AT2G40000 (E=2e-191) HSPRO2, ATHSPRO2 | HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (424 aa)
     
   
  0.509
Bra001565
AT3G14810 (E=0.0) MSL5 | MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5) (842 aa)
           
  0.505
Bra036492
AT2G20670 (E=2e-138) | unknown protein (297 aa)
           
  0.501
Bra031136
AT2G20670 (E=1e-142) | unknown protein (294 aa)
           
  0.501
Bra013036
AT2G17000 (E=0.0) | mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein (1708 aa)
           
  0.499
Bra002015
AT2G17000 (E=4e-254) | mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein (898 aa)
           
  0.499
Bra029641
AT3G07350 (E=5e-123) | unknown protein (300 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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