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Bra003716 protein (Brassica rapa) - STRING interaction network
"Bra003716" - AT1G76520 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003716AT1G76520 (E=7e-184) | auxin efflux carrier family protein (388 aa)    
Predicted Functional Partners:
Bra039029
AT2G19900 (E=1e-314) ATNADP-ME1 | ATNADP-ME1 (NADP-malic enzyme 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (582 aa)
         
  0.459
Bra037347
AT4G00570 (E=5e-256) | malate oxidoreductase, putative (587 aa)
         
  0.459
Bra037210
AT2G13560 (E=1e-296) | malate oxidoreductase, putative (618 aa)
         
  0.459
Bra023336
AT5G11670 (E=0.0) ATNADP-ME2 | ATNADP-ME2 (NADP-malic enzyme 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (588 aa)
         
  0.459
Bra009866
AT5G25880 (E=0.0) ATNADP-ME3 | ATNADP-ME3 (NADP-malic enzyme 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (588 aa)
         
  0.459
Bra006107
AT5G11670 (E=0.0) ATNADP-ME2 | ATNADP-ME2 (NADP-malic enzyme 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (588 aa)
         
  0.459
Bra003738
AT1G79750 (E=2e-197) ATNADP-ME4 | ATNADP-ME4 (NADP-malic enzyme 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (635 aa)
         
  0.459
Bra000967
AT2G13560 (E=2e-188) | malate oxidoreductase, putative (620 aa)
         
  0.459
Bra035498
AT1G12550 (E=1e-036) | oxidoreductase family protein (98 aa)
              0.437
Bra035206
AT1G79870 (E=1e-148) | oxidoreductase family protein (310 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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