STRINGSTRING
Bra003718 protein (Brassica rapa) - STRING interaction network
"Bra003718" - AT1G76440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003718AT1G76440 (E=1e-067) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Heat shock protein Hsp20 (InterPro-IPR002068), HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (142 aa)    
Predicted Functional Partners:
Bra009585
AT5G02480 (E=4e-230) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Heat shock protein Hsp20 (InterPro-IPR002068), HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- SLT1 (sodium- and lithium-tolerant 1) (TAIR-AT2G37570.1); Has 60 Blast hits to 60 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (515 aa)
           
  0.544
Bra007682
AT3G62470 (E=2e-254) | pentatricopeptide (PPR) repeat-containing protein (606 aa)
           
  0.541
Bra038733
AT3G12570 (E=2e-257) FYD | FYD (490 aa)
           
  0.477
Bra009082
AT5G09805 (E=2e-031) IDL3 | IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3) (103 aa)
           
  0.450
Bra018416
AT1G10950 (E=3e-269) | endomembrane protein 70, putative (579 aa)
           
  0.416
Bra008269
AT1G76640 (E=7e-065) | calmodulin-related protein, putative (169 aa)
           
  0.416
Bra008268
AT1G76640 (E=1e-057) | calmodulin-related protein, putative (170 aa)
           
  0.416
Bra024319
AT5G64667 (E=2e-028) IDL2 | IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) (85 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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