STRINGSTRING
Bra003742 protein (Brassica rapa) - STRING interaction network
"Bra003742" - AT1G75760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003742AT1G75760 (E=7e-150) | ER lumen protein retaining receptor family protein (272 aa)    
Predicted Functional Partners:
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
 
  0.931
Bra011848
AT1G62020 (E=1e-278) | coatomer protein complex, subunit alpha, putative (733 aa)
     
  0.917
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
         
  0.863
Bra031788
AT1G11890 (E=4e-121) SEC22, ATSEC22 | SEC22; transporter (479 aa)
     
 
  0.796
Bra038147
AT1G57620 (E=4e-093) | emp24/gp25L/p24 family protein (215 aa)
     
  0.765
Bra036221
AT3G29070 (E=3e-077) | protein transmembrane transporter (216 aa)
     
  0.765
Bra034146
AT3G10780 (E=6e-054) | emp24/gp25L/p24 family protein (197 aa)
     
  0.765
Bra033081
AT3G29070 (E=4e-074) | protein transmembrane transporter (222 aa)
     
  0.765
Bra031678
AT1G09580 (E=2e-019) | emp24/gp25L/p24 family protein (160 aa)
     
  0.765
Bra030786
AT1G09580 (E=9e-099) | emp24/gp25L/p24 family protein (211 aa)
     
  0.765
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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