STRINGSTRING
Bra003758 protein (Brassica rapa) - STRING interaction network
"Bra003758" - AT1G75330 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003758AT1G75330 (E=2e-183) OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornithine carbamoyltransferase (377 aa)    
Predicted Functional Partners:
Bra032344
AT1G29900 (E=0.0) CARB | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic (1176 aa)
   
  0.997
Bra017844
AT4G37670 (E=4e-129) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (569 aa)
   
 
  0.995
Bra011778
AT4G37670 (E=0.0) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (614 aa)
   
 
  0.995
Bra019206
AT4G24830 (E=2e-151) | arginosuccinate synthase family (517 aa)
   
 
  0.994
Bra013839
AT4G24830 (E=3e-248) | arginosuccinate synthase family (499 aa)
   
 
  0.994
Bra007866
AT3G27740 (E=4e-220) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (424 aa)
   
 
  0.983
Bra004395
AT3G27740 (E=6e-229) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (430 aa)
   
 
  0.983
Bra017182
AT2G37500 (E=3e-233) | arginine biosynthesis protein ArgJ family ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis- the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate (469 aa)
 
 
  0.978
Bra005190
AT2G37500 (E=8e-231) | arginine biosynthesis protein ArgJ family ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis- the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate (466 aa)
 
 
  0.978
Bra007337
AT3G57560 (E=7e-162) | aspartate/glutamate/uridylate kinase family protein (343 aa)
 
 
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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