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Bra003760 protein (Brassica rapa) - STRING interaction network
"Bra003760" - AT1G75230 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003760AT1G75230 (E=6e-115) | HhH-GPD base excision DNA repair family protein (339 aa)    
Predicted Functional Partners:
Bra018061
AT3G48425 (E=6e-195) | endonuclease/exonuclease/phosphatase family protein (358 aa)
     
  0.841
Bra016932
AT2G41460 (E=2e-153) ARP | ARP; DNA-(apurinic or apyrimidinic site) lyase (482 aa)
     
  0.841
Bra011657
AT4G36050 (E=1e-207) | endonuclease/exonuclease/phosphatase family protein (558 aa)
     
  0.841
Bra032653
AT1G01880 (E=2e-205) | DNA repair protein, putative (603 aa)
   
 
  0.673
Bra029924
AT3G48900 (E=4e-251) | DNA binding / catalytic/ chromatin binding / nuclease (622 aa)
   
 
  0.673
Bra009908
AT5G26680 (E=9e-202) | endonuclease, putative ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- [...] (363 aa)
   
 
  0.673
Bra025517
AT5G41150 (E=0.0) UVH1, ATRAD1, RAD1 | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1); single-stranded DNA specific endodeoxyribonuclease (955 aa)
     
 
  0.650
Bra040676
AT2G19490 (E=3e-173) | recA family protein (427 aa)
       
 
  0.648
Bra035691
AT2G28560 (E=7e-182) ATRAD51B, RAD51B | RAD51B; recombinase (464 aa)
       
 
  0.648
Bra031084
AT2G19490 (E=6e-164) | recA family protein (430 aa)
       
 
  0.648
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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