STRINGSTRING
Bra003766 protein (Brassica rapa) - STRING interaction network
"Bra003766" - AT1G61570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003766AT1G61570 (E=7e-020) TIM13 | TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13); P-P-bond-hydrolysis-driven protein transmembrane transporter (88 aa)    
Predicted Functional Partners:
Bra022760
AT5G50810 (E=6e-029) TIM8 | TIM8; P-P-bond-hydrolysis-driven protein transmembrane transporter (76 aa)
     
  0.996
Bra013855
AT5G50810 (E=4e-028) TIM8 | TIM8; P-P-bond-hydrolysis-driven protein transmembrane transporter (78 aa)
     
  0.996
Bra039986
AT2G29530 (E=2e-040) TIM10 | mitochondrial import inner membrane translocase (TIM10) (85 aa)
     
 
  0.987
Bra018381
AT2G29530 (E=1e-035) TIM10 | mitochondrial import inner membrane translocase (TIM10) (120 aa)
     
 
  0.987
Bra027011
AT3G46560 (E=4e-047) TIM9, emb2474 | TIM9; P-P-bond-hydrolysis-driven protein transmembrane transporter (93 aa)
     
 
  0.965
Bra039260
AT3G46560 (E=4e-044) TIM9, emb2474 | TIM9; P-P-bond-hydrolysis-driven protein transmembrane transporter (93 aa)
     
 
  0.964
Bra017051
AT2G39800 (E=0.0) P5CS1, ATP5CS | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (717 aa)
       
      0.932
Bra014732
AT3G55610 (E=0.0) P5CS2 | P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (719 aa)
       
      0.932
Bra007179
AT3G55610 (E=0.0) P5CS2 | P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (727 aa)
       
      0.932
Bra005012
AT2G39800 (E=0.0) P5CS1, ATP5CS | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (717 aa)
       
      0.932
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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