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Bra003767 protein (Brassica rapa) - STRING interaction network
"Bra003767" - AT3G48110 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003767AT3G48110 (E=2e-278) EDD1, EDD | EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1); glycine-tRNA ligase (1044 aa)    
Predicted Functional Partners:
Bra032341
AT1G29880 (E=0.0) | glycyl-tRNA synthetase / glycine--tRNA ligase (687 aa)
         
  0.889
Bra030179
AT1G29880 (E=0.0) | glycyl-tRNA synthetase / glycine--tRNA ligase (722 aa)
         
  0.889
Bra020666
AT5G49030 (E=0.0) OVA2 | OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ catalytic/ isoleucine-tRNA ligase/ nucleotide binding (1087 aa)
 
   
  0.872
Bra037439
AT5G49030 (E=0.0) OVA2 | OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ catalytic/ isoleucine-tRNA ligase/ nucleotide binding (1084 aa)
 
   
  0.872
Bra025459
AT4G10320 (E=0.0) | isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (1175 aa)
   
   
  0.840
Bra019389
AT4G10320 (E=0.0) | isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (1097 aa)
   
   
  0.840
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
   
   
  0.803
Bra041070
AT4G33760 (E=8e-251) | tRNA synthetase class II (D, K and N) family protein (850 aa)
   
   
  0.796
Bra034582
AT4G33770 (E=1e-145) | inositol 1,3,4-trisphosphate 5/6-kinase family protein (769 aa)
   
   
  0.796
Bra027447
AT4G33760 (E=8e-066) | tRNA synthetase class II (D, K and N) family protein (399 aa)
   
   
  0.796
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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