STRINGSTRING
Bra003770 protein (Brassica rapa) - STRING interaction network
"Bra003770" - AT1G57610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003770AT1G57610 (E=4e-116) | unknown protein (286 aa)    
Predicted Functional Partners:
Bra007118
AT3G54940 (E=6e-171) | cysteine-type endopeptidase/ cysteine-type peptidase (364 aa)
           
  0.510
Bra036681
AT2G20360 (E=7e-186) | binding / catalytic/ coenzyme binding (560 aa)
       
      0.508
Bra031117
AT2G20360 (E=3e-188) | binding / catalytic/ coenzyme binding (403 aa)
       
      0.508
Bra001554
AT3G14450 (E=1e-155) CID9 | CID9 (CTC-Interacting Domain 9); RNA binding / protein binding (326 aa)
           
  0.499
Bra031650
AT1G08960 (E=2e-071) CAX11, ATCAX11 | CAX11; calcium-sodium antiporter/ cation-cation antiporter (182 aa)
           
  0.491
Bra030905
AT1G54115 (E=2e-157) ATCCX4, CCX4 | CCX4 (CATION CALCIUM EXCHANGER 4); cation-cation antiporter (607 aa)
           
  0.491
Bra027375
AT3G14070 (E=1e-291) CAX9, CCX3, ATCCX3 | CAX9 (CATION EXCHANGER 9); cation transmembrane transporter/ cation-cation antiporter/ manganese ion transmembrane transporter/ potassium ion transmembrane transporter/ sodium ion transmembrane transporter (639 aa)
           
  0.491
Bra023643
AT5G17860 (E=9e-235) CAX7 | CAX7 (calcium exchanger 7); calcium-sodium antiporter/ cation-cation antiporter (578 aa)
           
  0.491
Bra023641
AT5G17850 (E=4e-237) | cation exchanger, putative (CAX8) (551 aa)
           
  0.491
Bra023640
AT5G17850 (E=5e-112) | cation exchanger, putative (CAX8) (466 aa)
           
  0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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