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Bra003772 protein (Brassica rapa) - STRING interaction network
"Bra003772" - AT1G75080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003772AT1G75080 (E=2e-143) BZR1 | BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (331 aa)    
Predicted Functional Partners:
Bra020994
AT4G18710 (E=2e-223) BIN2, DWF12, UCU1, ATSK21, SK21 | BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase (380 aa)
       
  0.987
Bra021685
AT2G30980 (E=8e-221) ASKdZeta, ATSK23, BIL1, ATSK2-2 | ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (410 aa)
       
  0.940
Bra013341
AT4G18710 (E=6e-222) BIN2, DWF12, UCU1, ATSK21, SK21 | BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase (374 aa)
       
  0.940
Bra008976
AT5G11260 (E=6e-048) HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (164 aa)
       
 
  0.923
Bra006182
AT5G13120 (E=1e-118) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (257 aa)
       
 
  0.886
Bra039762
AT1G66350 (E=6e-231) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (488 aa)
       
 
  0.835
Bra024875
AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (573 aa)
       
 
  0.831
Bra013973
AT5G17490 (E=7e-228) RGL3 | RGL3 (RGA-LIKE PROTEIN 3); transcription factor (525 aa)
       
 
  0.829
Bra025733
AT1G19350 (E=5e-114) BES1, BZR2 | BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (331 aa)
       
0.755
Bra017782
AT4G36780 (E=6e-066) | transcription regulator (313 aa)
       
0.706
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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